Basic Information
Locus ID:
Sp3g18040.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 6427432 | 6434658 | + | Sp3g18040.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 111,122.76 Da | 51.82 | 78.67 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 242 | 596 | 1.13773E-85 | - |
| CDD | cd18793 | SF2_C_SNF | 851 | 955 | 4.81379E-52 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 712 | 749 | 1.7E-8 | IPR018957 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 263 | 674 | 4.9E-71 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 850 | 946 | 2.8E-13 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 604 | 1003 | 2.47E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 226 | 596 | 1.95E-48 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 708 | 769 | 1.39E-12 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 356 | 458 | 9.7E-13 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 611 | 1003 | 1.6E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 463 | 610 | 1.8E-31 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 696 | 762 | 4.4E-14 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 210 | 305 | 4.8E-11 | IPR038718 |
| SMART | SM00184 | ring_2 | 712 | 750 | 1.1E-5 | IPR001841 |
| SMART | SM00487 | ultradead3 | 238 | 575 | 1.9E-31 | IPR014001 |
| SMART | SM00490 | helicmild6 | 863 | 946 | 1.0E-16 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 712 | 751 | 11.751628 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 833 | 999 | 13.177888 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 338 | 558 | 12.810272 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 727 | 736 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 335 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 326 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20010.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_006406428.2 | helicase-like transcription factor CHR27 [Eutrema salsugineum] | 0 |
| Q9LHE4 | Helicase-like transcription factor CHR27 OS=Arabidopsis thaliana OX=3702 GN=CHR27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A565BBW0 | Helicase-like transcription factor CHR28 OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS8751 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology