Basic Information
Locus ID:
Sp3g17780.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 6324971 | 6327321 | + | Sp3g17780.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 46,099.34 Da | 40.43 | 90.73 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18045 | DEADc_EIF4AIII_DDX48 | 37 | 237 | 4.16901E-117 | - |
| CDD | cd18787 | SF2_C_DEAD | 248 | 378 | 4.91935E-64 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 261 | 369 | 2.3E-32 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 60 | 222 | 3.7E-41 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 103 | 391 | 9.85E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 244 | 408 | 9.6E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 25 | 243 | 1.7E-63 | IPR027417 |
| SMART | SM00490 | helicmild6 | 288 | 369 | 3.0E-36 | IPR001650 |
| SMART | SM00487 | ultradead3 | 54 | 251 | 1.2E-54 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 35 | 63 | 10.712903 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 66 | 236 | 25.730879 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 247 | 408 | 27.364197 | IPR001650 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_013608350.1 | PREDICTED: DEAD-box ATP-dependent RNA helicase 2-like [Brassica oleracea var. oleracea] | 0 |
| Q94A52 | Eukaryotic initiation factor 4A-III homolog OS=Arabidopsis thaliana OX=3702 GN=EIF4A3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A397ZC25 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA05T21833Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology