Basic Information
Locus ID:
Sp3g16960.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Transducin family protein WD-40 repeat family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 5977813 | 5983113 | + | Sp3g16960.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 83,817.31 Da | 31.70 | 95.42 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 10 | 291 | 1.20776E-60 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 138 | 175 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 257 | 291 | 0.009 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 179 | 213 | 6.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 12 | 45 | 6.0E-5 | IPR001680 |
| Pfam | PF08324 | PUL domain | 485 | 750 | 9.6E-59 | IPR013535 |
| Pfam | PF09070 | PFU (PLAA family ubiquitin binding) | 338 | 447 | 1.3E-35 | IPR015155 |
| Pfam | PF00400 | WD domain, G-beta repeat | 220 | 254 | 0.0031 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 5 | 307 | 4.27E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 310 | 4.5E-74 | IPR015943 |
| Gene3D | G3DSA:3.10.20.870 | - | 379 | 452 | 4.8E-24 | IPR038122 |
| Gene3D | G3DSA:1.25.10.10 | - | 483 | 754 | 2.1E-69 | IPR011989 |
| SMART | SM00320 | WD40_4 | 137 | 175 | 3.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 176 | 214 | 1.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 7 | 45 | 4.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 99 | 136 | 0.28 | IPR001680 |
| SMART | SM00320 | WD40_4 | 216 | 254 | 5.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 52 | 96 | 0.37 | IPR001680 |
| SMART | SM00320 | WD40_4 | 255 | 292 | 7.9E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 183 | 213 | 9.203785 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 59 | 105 | 10.007177 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 106 | 135 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 144 | 175 | 8.67045 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 14 | 54 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 14 | 48 | 9.441055 | - |
| ProSiteProfiles | PS51394 | PFU domain profile. | 358 | 454 | 35.307339 | IPR015155 |
| ProSiteProfiles | PS51396 | PUL domain profile. | 483 | 754 | 29.712414 | IPR013535 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 183 | 213 | 10.976305 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 223 | 254 | 9.873505 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 83 | 97 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 201 | 215 | 7.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 32 | 46 | 7.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 83 | 97 | 7.7E-6 | IPR020472 |
| Coils | Coil | Coil | 677 | 697 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18860.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_018492515.1 | PREDICTED: phospholipase A-2-activating protein-like [Raphanus sativus] | 0 |
| P27612 | Phospholipase A-2-activating protein OS=Mus musculus OX=10090 GN=Plaa PE=1 SV=4 | 0 | |
| TrEMBL | A0A6J0P796 | phospholipase A-2-activating protein-like OS=Raphanus sativus OX=3726 GN=LOC108862777 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28741 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21622 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010291 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g144170, BVRB_9g217900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12482, Sbi_jg45834 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20193 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022412 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl00010, Sgl05076 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018164, gene:ENSEOMG00000036625 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7BG0008060, CQ.Regalona.r1.9AG0016470 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30113810 |
| Apiaceae | Apium graveolens | 1 | Ag9G00113 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G019770, COCNU_06G019780 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720793, gene-LOC103721263 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3102.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G33535 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G18860.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020129m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g16960.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g045490.2N, BniB07g030200.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0048 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0054 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g00530 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0103s00015.v1.0, Dusal.0103s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g30790 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5681 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.95 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035638 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G17221, Lb3G17231 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.148, BH03.180, CH03.237 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0554340, gene-QOZ80_7BG0585410 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0154580.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041942 |
| Poaceae | Oryza coarctata | 2 | Oco13G000820, Oco14G000880 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g03160.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G021700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0303447, Pt_Chr0303466 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G005180, Chr24G002030, Chr28G000530 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G471800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG038060, gene_TRIDC2BG040020 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G266700.1, TraesCS2B02G275700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb299230_P005 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35844 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4702 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.Contig29.2, evm.TU.LG08.1826, evm.TU.LG22.36 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g27960 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.247 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4956 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18724 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9881 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.803 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005978 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14729 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1286 |
| Salicaceae | Populus euphratica | 3 | populus_peu08910, populus_peu36437, populus_peu36441 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599142 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007899 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7815 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0516 |
| Zosteraceae | Zostera marina | 1 | Zosma06g01730.v3.1 |