HalophFGD

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Basic Information
Locus ID: Sp3g15660.v2.2
Species & Taxonomic ID: Schrenkiella parvula & 98039
Genome Assembly: v2.2
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
ch3-1 5502448 5503569 + Sp3g15660.v2.2
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.07 34,938.25 Da 48.67 80.47 -0.38
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF07734 F-box associated 192 288 6.8E-19 IPR006527
Pfam PF00646 F-box domain 5 47 1.3E-4 IPR001810
SUPERFAMILY SSF81383 F-box domain 5 135 1.23E-11 IPR036047
Gene3D G3DSA:1.20.1280.50 - 2 108 4.6E-6 -
SMART SM00256 fbox_2 6 46 9.9E-4 IPR001810
TIGRFAM TIGR01640 F_box_assoc_1: F-box protein interaction domain 107 192 1.6E-18 IPR017451
ProSiteProfiles PS50181 F-box domain profile. 1 50 8.59666 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G17500.2 - 0
RefSeq NP_001327519.1 F-box family protein [Arabidopsis thaliana] 0
Swiss-Prot Q9LUP7 Putative F-box protein At3g17500 OS=Arabidopsis thaliana OX=3702 GN=At3g17500 PE=4 SV=1 0
TrEMBL A0A5S9XEK3 F-box domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=C24_LOCUS12978 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Arecaceae Cocos nucifera 1 COCNU_01G005860
Brassicaceae Arabidopsis thaliana 81 AT1G11620.1, AT1G25141.1, AT1G50470.1, AT1G62270.1 ...
AT1G65990.1, AT2G04920.1, AT2G07140.1, AT2G11200.1, AT2G17830.1, AT2G18780.1, AT2G24510.1, AT2G27520.1, AT2G38590.1, AT3G03405.1, AT3G04250.1, AT3G16020.1, AT3G16740.1, AT3G16820.1, AT3G16880.1, AT3G17265.1, AT3G17270.1, AT3G17280.1, AT3G17320.1, AT3G17400.1, AT3G17480.1, AT3G17490.1, AT3G17500.1, AT3G17530.1, AT3G17540.1, AT3G17560.1, AT3G17570.1, AT3G17620.1, AT3G18120.1, AT3G18320.1, AT3G18330.1, AT3G18910.1, AT3G18980.1, AT3G19410.1, AT3G19470.1, AT3G19560.1, AT3G20690.1, AT3G20700.1, AT3G20710.1, AT3G21120.1, AT3G21130.1, AT3G21170.1, AT3G22350.1, AT3G22421.1, AT3G22700.1, AT3G22710.1, AT3G22720.1, AT3G22730.1, AT3G22770.1, AT3G22870.1, AT3G22940.1, AT3G23260.1, AT3G23420.1, AT3G23633.1, AT3G23680.1, AT3G23685.1, AT3G24580.1, AT3G24700.1, AT3G25090.1, AT3G25460.1, AT3G44120.1, AT3G49980.1, AT4G09870.1, AT4G10190.1, AT4G10740.1, AT4G33290.1, AT5G36190.1, AT5G36200.1, AT5G36730.1, AT5G36820.1, AT5G41490.1, AT5G41500.1, AT5G41510.1, AT5G42460.1, AT5G47300.1, AT5G51000.1, AT5G62830.1
Brassicaceae Eutrema salsugineum 96 Thhalv10000454m.g.v1.0, Thhalv10000467m.g.v1.0 ...
Thhalv10000599m.g.v1.0, Thhalv10000604m.g.v1.0, Thhalv10001129m.g.v1.0, Thhalv10001171m.g.v1.0, Thhalv10001844m.g.v1.0, Thhalv10002009m.g.v1.0, Thhalv10002791m.g.v1.0, Thhalv10002795m.g.v1.0, Thhalv10002817m.g.v1.0, Thhalv10002867m.g.v1.0, Thhalv10002868m.g.v1.0, Thhalv10002911m.g.v1.0, Thhalv10002915m.g.v1.0, Thhalv10002939m.g.v1.0, Thhalv10002957m.g.v1.0, Thhalv10002977m.g.v1.0, Thhalv10002981m.g.v1.0, Thhalv10002985m.g.v1.0, Thhalv10002999m.g.v1.0, Thhalv10003000m.g.v1.0, Thhalv10003040m.g.v1.0, Thhalv10003050m.g.v1.0, Thhalv10003090m.g.v1.0, Thhalv10003102m.g.v1.0, Thhalv10003403m.g.v1.0, Thhalv10005679m.g.v1.0, Thhalv10006371m.g.v1.0, Thhalv10007777m.g.v1.0, Thhalv10009814m.g.v1.0, Thhalv10012007m.g.v1.0, Thhalv10012157m.g.v1.0, Thhalv10015377m.g.v1.0, Thhalv10015387m.g.v1.0, Thhalv10015418m.g.v1.0, Thhalv10015430m.g.v1.0, Thhalv10015464m.g.v1.0, Thhalv10015770m.g.v1.0, Thhalv10015830m.g.v1.0, Thhalv10015889m.g.v1.0, Thhalv10017529m.g.v1.0, Thhalv10017637m.g.v1.0, Thhalv10020932m.g.v1.0, Thhalv10020934m.g.v1.0, Thhalv10020988m.g.v1.0, Thhalv10021906m.g.v1.0, Thhalv10021918m.g.v1.0, Thhalv10021925m.g.v1.0, Thhalv10021928m.g.v1.0, Thhalv10021950m.g.v1.0, Thhalv10021953m.g.v1.0, Thhalv10021978m.g.v1.0, Thhalv10021981m.g.v1.0, Thhalv10022006m.g.v1.0, Thhalv10022064m.g.v1.0, Thhalv10022067m.g.v1.0, Thhalv10022074m.g.v1.0, Thhalv10022075m.g.v1.0, Thhalv10022089m.g.v1.0, Thhalv10022091m.g.v1.0, Thhalv10022121m.g.v1.0, Thhalv10022140m.g.v1.0, Thhalv10022141m.g.v1.0, Thhalv10022145m.g.v1.0, Thhalv10022148m.g.v1.0, Thhalv10022163m.g.v1.0, Thhalv10022189m.g.v1.0, Thhalv10022250m.g.v1.0, Thhalv10022266m.g.v1.0, Thhalv10022270m.g.v1.0, Thhalv10022281m.g.v1.0, Thhalv10022288m.g.v1.0, Thhalv10022315m.g.v1.0, Thhalv10022361m.g.v1.0, Thhalv10022364m.g.v1.0, Thhalv10022368m.g.v1.0, Thhalv10022377m.g.v1.0, Thhalv10022393m.g.v1.0, Thhalv10022401m.g.v1.0, Thhalv10022418m.g.v1.0, Thhalv10022425m.g.v1.0, Thhalv10022798m.g.v1.0, Thhalv10023157m.g.v1.0, Thhalv10026768m.g.v1.0, Thhalv10026986m.g.v1.0, Thhalv10027003m.g.v1.0, Thhalv10027013m.g.v1.0, Thhalv10027248m.g.v1.0, Thhalv10027355m.g.v1.0, Thhalv10027376m.g.v1.0, Thhalv10027471m.g.v1.0, Thhalv10027516m.g.v1.0, Thhalv10027561m.g.v1.0, Thhalv10028127m.g.v1.0, Thhalv10029509m.g.v1.0
Brassicaceae Schrenkiella parvula 15 Sp1g20770.v2.2, Sp3g14050.v2.2, Sp3g15200.v2.2 ...
Sp3g15660.v2.2, Sp3g15690.v2.2, Sp3g17310.v2.2, Sp3g18730.v2.2, Sp3g19130.v2.2, Sp3g21250.v2.2, Sp3g22340.v2.2, Sp4g04370.v2.2, Sp4g16570.v2.2, Sp4g17180.v2.2, Sp7g11920.v2.2, Sp7g29450.v2.2
Brassicaceae Brassica nigra 83 BniB01g038780.2N, BniB01g039020.2N, BniB01g039120.2N ...
BniB01g042490.2N, BniB01g042510.2N, BniB01g042540.2N, BniB01g042580.2N, BniB01g042590.2N, BniB01g042610.2N, BniB01g043040.2N, BniB01g043050.2N, BniB01g043060.2N, BniB01g043110.2N, BniB01g044140.2N, BniB01g044150.2N, BniB01g045040.2N, BniB01g047300.2N, BniB01g047310.2N, BniB01g047900.2N, BniB01g049140.2N, BniB01g049150.2N, BniB02g010180.2N, BniB02g010740.2N, BniB02g047620.2N, BniB02g064000.2N, BniB03g024790.2N, BniB03g025020.2N, BniB03g039860.2N, BniB03g049230.2N, BniB03g049760.2N, BniB03g068000.2N, BniB04g038530.2N, BniB04g038580.2N, BniB04g038590.2N, BniB04g038600.2N, BniB04g038610.2N, BniB04g038620.2N, BniB04g043970.2N, BniB04g056000.2N, BniB04g056010.2N, BniB05g004620.2N, BniB05g007210.2N, BniB05g007230.2N, BniB05g017560.2N, BniB05g019400.2N, BniB05g019430.2N, BniB05g025140.2N, BniB05g038570.2N, BniB06g008450.2N, BniB06g026860.2N, BniB06g027320.2N, BniB06g027400.2N, BniB06g027440.2N, BniB06g028000.2N, BniB06g048280.2N, BniB07g002470.2N, BniB07g002490.2N, BniB07g002510.2N, BniB07g023750.2N, BniB07g024380.2N, BniB07g024430.2N, BniB07g029280.2N, BniB07g029470.2N, BniB07g029780.2N, BniB07g030600.2N, BniB07g031750.2N, BniB07g048390.2N, BniB07g048640.2N, BniB07g048810.2N, BniB07g050430.2N, BniB07g051260.2N, BniB07g052390.2N, BniB07g052550.2N, BniB07g052760.2N, BniB07g052960.2N, BniB07g053790.2N, BniB07g057530.2N, BniB07g057550.2N, BniB08g006680.2N, BniB08g006690.2N, BniB08g019980.2N, BniB08g038820.2N, BniS06172g150.2N
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.