Basic Information
Locus ID:
Sp3g15070.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Topless-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 5274710 | 5280608 | + | Sp3g15070.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 124,803.23 Da | 41.78 | 79.12 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 449 | 483 | 0.0033 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 909 | 942 | 0.0013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 347 | 657 | 5.5E-42 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 518 | 1091 | 3.45E-39 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 748 | 962 | 1.3E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 963 | 1105 | 3.2E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 535 | 659 | 2.5E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 278 | 534 | 1.7E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 442 | 483 | 0.0011 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 9.3E-5 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.4E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 575 | 615 | 0.49 | IPR001680 |
| SMART | SM00320 | WD40_4 | 861 | 901 | 3.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 529 | 572 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 393 | 437 | 82.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 337 | 376 | 0.29 | IPR001680 |
| SMART | SM00320 | WD40_4 | 817 | 858 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 526 | 0.0036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 904 | 943 | 2.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 993 | 1035 | 0.69 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 911 | 952 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.330713 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.071995 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 911 | 942 | 9.651964 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 593 | 624 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 449 | 492 | 8.737287 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 470 | 484 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1110 | 1132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1105 | 1132 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_006406802.1 | topless-related protein 2 [Eutrema salsugineum] | 0 |
| Q9LRZ0 | Topless-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=TPR2 PE=1 SV=2 | 0 | |
| TrEMBL | V4LCS8 | Topless-related protein 2 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019939mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology