Basic Information
Locus ID:
Sp3g14990.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 5240769 | 5241671 | + | Sp3g14990.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 33,145.07 Da | 83.38 | 67.63 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 116 | 159 | 1.36847E-20 | - |
| Pfam | PF13639 | Ring finger domain | 116 | 159 | 6.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 97 | 165 | 1.3E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 81 | 164 | 2.4E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 117 | 158 | 1.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 117 | 159 | 12.710573 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 300 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16720.1 | TOXICOS EN LEVADURA 2. RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. | 0 |
| RefSeq | XP_020889198.1 | RING-H2 finger protein ATL2 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q8L9T5 | RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2 | 0 | |
| TrEMBL | D7L665 | RING-type E3 ubiquitin transferase OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_479140 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology