Basic Information
Locus ID:
Sp3g13920.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
UVR3
Description:
photolyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 4864492 | 4867784 | - | Sp3g13920.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 66,879.02 Da | 47.73 | 73.10 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00875 | DNA photolyase | 49 | 210 | 5.3E-45 | IPR006050 |
| Pfam | PF03441 | FAD binding domain of DNA photolyase | 338 | 535 | 4.5E-77 | IPR005101 |
| SUPERFAMILY | SSF52425 | Cryptochrome/photolyase, N-terminal domain | 49 | 216 | 3.53E-45 | IPR036155 |
| SUPERFAMILY | SSF48173 | Cryptochrome/photolyase FAD-binding domain | 249 | 540 | 1.44E-97 | IPR036134 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 44 | 182 | 2.8E-43 | IPR014729 |
| Gene3D | G3DSA:1.25.40.80 | - | 183 | 353 | 1.5E-48 | - |
| Gene3D | G3DSA:1.10.579.10 | DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 | 355 | 580 | 2.5E-102 | - |
| ProSiteProfiles | PS51645 | Photolyase/cryptochrome alpha/beta domain profile. | 47 | 185 | 35.748898 | IPR006050 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 580 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15620.1 | DNA photolyase family protein. Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana. | 0 |
| RefSeq | XP_006406944.1 | (6-4)DNA photolyase [Eutrema salsugineum] | 0 |
| O48652 | (6-4)DNA photolyase OS=Arabidopsis thaliana OX=3702 GN=UVR3 PE=1 SV=2 | 0 | |
| TrEMBL | V4M0R0 | Photolyase/cryptochrome alpha/beta domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020425mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18216 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26181 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010631 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g220030 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg11524, Sbi_jg31461, Sbi_jg46461 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20772 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005222 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl55971, Sgl61142, Sgl61143 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016895, gene:ENSEOMG00000036241 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0007470, CQ.Regalona.r1.7BG0010330 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30126770, pistato.v30127620 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G016930 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708787 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.906.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri18G01646, Ftri18G07137, Ftri18G16268 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G15620.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020425m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g13920.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g054080.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0630 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0285 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g04320 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0203s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g23920 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.434 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027769 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30163 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.770, BH07.903, CH07.657 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0105590, gene-QOZ80_2BG0159020 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0577620.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021462 |
| Poaceae | Oryza coarctata | 2 | Oco03G005380, Oco04G005450 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g10990.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G079800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202063 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G355600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG025800, gene_TRIDC6BG032050 |
| Poaceae | Triticum aestivum | 2 | TraesCS6A02G177000.2, TraesCS6D02G167100.1 |
| Poaceae | Zea mays | 1 | Zm00001eb235370_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-33436 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12414 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1750, evm.TU.LG15.1443 |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc01g22210, gene.Posoc03g12720, gene.Posoc08g15620 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.450 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28059 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6653 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7881 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.183 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018946 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7298 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21227 |
| Salicaceae | Populus euphratica | 1 | populus_peu33731 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603664 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005259 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10122 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2152 |