Basic Information
Locus ID:
Sp3g13590.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
UBC25
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 4754121 | 4757114 | + | Sp3g13590.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 68,253.10 Da | 41.32 | 69.53 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 345 | 471 | 2.74914E-33 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 346 | 491 | 2.9E-23 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 327 | 510 | 9.18E-41 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 303 | 577 | 2.7E-84 | IPR016135 |
| SMART | SM00212 | ubc_7 | 345 | 502 | 3.4E-19 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 342 | 502 | 36.031425 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 616 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 616 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 93 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15355.1 | ubiquitin-conjugating enzyme 25. | 0 |
| RefSeq | XP_018439750.1 | PREDICTED: probable ubiquitin-conjugating enzyme E2 25 [Raphanus sativus] | 0 |
| Q9LUQ5 | Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana OX=3702 GN=UBC25 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VUF2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_020933 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology