Basic Information
Locus ID:
Sp3g13540.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 4739590 | 4742745 | - | Sp3g13540.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 90,393.66 Da | 57.10 | 80.72 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 508 | 535 | 0.17 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 670 | 705 | 0.0012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 505 | 807 | 2.44E-46 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 64 | 306 | 4.71E-19 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 482 | 811 | 2.9E-110 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 74 | 305 | 1.1E-23 | - |
| SMART | SM00320 | WD40_4 | 769 | 808 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 547 | 586 | 8.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 501 | 536 | 0.44 | IPR001680 |
| SMART | SM00320 | WD40_4 | 714 | 753 | 1.7 | IPR001680 |
| SMART | SM00220 | serkin_6 | 24 | 296 | 0.001 | IPR000719 |
| SMART | SM00320 | WD40_4 | 667 | 705 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 589 | 623 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 624 | 663 | 0.45 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 296 | 11.425232 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 674 | 707 | 10.284687 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 674 | 707 | 12.346452 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 692 | 706 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| Coils | Coil | Coil | 171 | 191 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.1 | SPA1-related 3. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA3 (and SPA4) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_006406987.1 | protein SPA1-RELATED 3 isoform X1 [Eutrema salsugineum] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | V4LDA9 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020057mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology