Basic Information
Locus ID:
Sp3g12940.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
F-box FBD LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 4516190 | 4517739 | + | Sp3g12940.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.29 | 52,028.20 Da | 50.67 | 107.01 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08387 | FBD | 383 | 424 | 4.5E-5 | IPR006566 |
| Pfam | PF00646 | F-box domain | 30 | 67 | 1.2E-7 | IPR001810 |
| SUPERFAMILY | SSF52058 | L domain-like | 94 | 373 | 5.1E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 29 | 89 | 3.27E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 29 | 66 | 2.2E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 67 | 458 | 6.7E-9 | IPR032675 |
| SMART | SM00579 | 9598neu4hmm | 386 | 454 | 3.7E-8 | IPR006566 |
| SMART | SM00256 | fbox_2 | 34 | 75 | 1.2E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 28 | 76 | 10.7692 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14710.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_006407053.2 | LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At3g14710 [Eutrema salsugineum] | 0 |
| Q9LUC4 | F-box/FBD/LRR-repeat protein At3g14710 OS=Arabidopsis thaliana OX=3702 GN=At3g14710 PE=2 SV=1 | 0 | |
| TrEMBL | V4NPR0 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10022020mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G14710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022020m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g12940.v2.2 |
| Plantaginaceae | Plantago ovata | 85 | Pov_00000641, Pov_00001267, Pov_00001269, Pov_00001271 ... |