Basic Information
Locus ID:
Sp3g12690.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
UBP25
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 4405053 | 4408100 | - | Sp3g12690.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 74,385.43 Da | 51.46 | 72.25 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 23 | 333 | 4.8734E-160 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 25 | 332 | 7.8E-51 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 17 | 334 | 3.73E-91 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 18 | 337 | 7.7E-93 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 24 | 335 | 50.603432 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 25 | 40 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 277 | 295 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 566 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 518 | - | - |
| Coils | Coil | Coil | 572 | 599 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14400.1 | ubiquitin-specific protease 25. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_013719739.2 | ubiquitin carboxyl-terminal hydrolase 25 [Brassica napus] | 0 |
| Q9FPS2 | Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis thaliana OX=3702 GN=UBP25 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7V7U5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025387 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19187, jg21219 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12680 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007191 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19016, Sbi_jg37445 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5285 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015219 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl22275, Sgl22314, Sgl27555 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012341, gene:ENSEOMG00000027113 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0015600, CQ.Regalona.r1.4BG0016520 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30163890 |
| Apiaceae | Apium graveolens | 1 | Ag3G02458 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G019970, COCNU_14G008560 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721095 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1881.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G27205, Ftri3G14479 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G14400.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020237m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g12690.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g050670.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq01G0848, Ceq09G0763, Ceq09G0764 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl01G0975, Cgl09G0823, Cgl09G0824 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g15150 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0725s00008.v1.0, Dusal.1057s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g26450 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1120 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1080 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008420 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34844 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1793, BH05.1959, CH05.2028 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0367450, gene-QOZ80_5BG0414870 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0078450.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_014835 |
| Poaceae | Oryza coarctata | 2 | Oco09G013840, Oco10G013900 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g43480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G197700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0504243 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G017250, Chr12G019470, Chr18G013530, Chr22G004110 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G536100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG048860, gene_TRIDC1BG055540 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G329200.2, TraesCS1B02G342600.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb292450_P001, Zm00001eb352840_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14387, nbis-gene-25206 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g26896, Zma_g28560 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.1155 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19680 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.105 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10506 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5365 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10669 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.63 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013225 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9278 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6919 |
| Salicaceae | Populus euphratica | 3 | populus_peu00570, populus_peu00621, populus_peu17633 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616584 |
| Solanaceae | Solanum chilense | 1 | SOLCI007357000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026309 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24509_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2469 |
| Zosteraceae | Zostera marina | 1 | Zosma01g07060.v3.1 |