Basic Information
Locus ID:
Sp3g11550.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
high mobility group
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 3950159 | 3952430 | - | Sp3g11550.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.84 | 35,517.83 Da | 49.78 | 71.31 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 42 | 125 | 3.83918E-44 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 233 | 297 | 2.0558E-17 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 42 | 125 | 7.0E-16 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 235 | 300 | 2.2E-11 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 231 | 303 | 2.62E-18 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 39 | 130 | 3.53E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 213 | 310 | 3.6E-17 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 23 | 146 | 8.0E-26 | IPR036431 |
| SMART | SM00398 | hmgende2 | 232 | 301 | 4.5E-9 | IPR009071 |
| SMART | SM00501 | bright_3 | 39 | 130 | 5.2E-27 | IPR001606 |
| SMART | SM01014 | ARID_2 | 35 | 125 | 4.0E-28 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 38 | 129 | 25.034277 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 233 | 300 | 12.878967 | IPR009071 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_020887370.1 | high mobility group B protein 10 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J3G1M6 | High mobility group B protein 10 OS=Noccaea caerulescens OX=107243 GN=LC_TR3288_c0_g1_i1_g.12727 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology