Basic Information
Locus ID:
Sp3g11270.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 3853320 | 3858358 | - | Sp3g11270.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 148,910.94 Da | 41.30 | 105.69 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 803 | 1094 | 1.47305E-88 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 208 | 489 | 7.97636E-85 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1117 | 1329 | 1.81249E-117 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 505 | 705 | 4.08393E-92 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 805 | 1072 | 1.4E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 523 | 657 | 1.9E-20 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1140 | 1284 | 5.5E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 208 | 474 | 6.9E-19 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1112 | 1329 | 2.11E-62 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 803 | 1100 | 1.44E-53 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 195 | 485 | 8.76E-25 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 501 | 727 | 3.1E-57 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 767 | 1100 | 2.2E-59 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1102 | 1332 | 1.8E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 499 | 733 | 3.0E-71 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 183 | 495 | 8.4E-36 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1145 | 1330 | 9.2E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 532 | 705 | 4.3E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1119 | 1333 | 12.61187 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 505 | 728 | 22.409073 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 207 | 487 | 25.060453 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 805 | 1075 | 39.444546 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 630 | 644 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 744 | 779 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 754 | 779 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13100.1 | multidrug resistance-associated protein 7. member of MRP subfamily | 0 |
| RefSeq | XP_020889346.1 | ABC transporter C family member 7 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q9LK62 | ABC transporter C family member 7 OS=Arabidopsis thaliana OX=3702 GN=ABCC7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A565B8J3 | ABC-type xenobiotic transporter OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS7899 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology