Basic Information
Locus ID:
Sp3g11260.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 3846968 | 3852112 | - | Sp3g11260.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.26 | 164,582.63 Da | 38.60 | 105.22 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 604 | 804 | 1.45641E-93 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1219 | 1439 | 7.00957E-122 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 291 | 578 | 9.8328E-88 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 902 | 1196 | 3.74889E-88 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 291 | 557 | 3.3E-18 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 904 | 1144 | 5.3E-26 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1238 | 1386 | 2.4E-30 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 622 | 756 | 9.8E-21 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 278 | 578 | 3.79E-25 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 598 | 826 | 1.09E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 903 | 1202 | 4.19E-53 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1214 | 1447 | 8.95E-66 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 864 | 1202 | 2.8E-58 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 265 | 585 | 1.9E-40 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1204 | 1457 | 2.2E-80 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 586 | 837 | 4.2E-75 | IPR027417 |
| SMART | SM00382 | AAA_5 | 631 | 804 | 3.6E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1247 | 1432 | 5.6E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 904 | 1184 | 37.813145 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1221 | 1455 | 16.953585 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 604 | 827 | 22.208994 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 290 | 570 | 24.716299 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 729 | 743 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 851 | 876 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 846 | 876 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13090.1 | multidrug resistance-associated protein 8. member of MRP subfamily | 0 |
| RefSeq | XP_033137396.1 | ABC transporter C family member 6 isoform X2 [Brassica rapa] | 0 |
| Q8VZZ4 | ABC transporter C family member 6 OS=Arabidopsis thaliana OX=3702 GN=ABCC6 PE=2 SV=3 | 0 | |
| TrEMBL | A0A6J0JXT1 | ABC-type xenobiotic transporter OS=Raphanus sativus OX=3726 GN=LOC108811905 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology