Basic Information
Locus ID:
Sp3g11250.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ATPase activity, coupled to transmembrane movement of substances
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 3840170 | 3845309 | - | Sp3g11250.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 168,292.59 Da | 39.02 | 105.30 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 950 | 1244 | 1.14228E-93 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 639 | 839 | 4.72128E-93 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 326 | 613 | 7.86916E-105 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1267 | 1487 | 1.65934E-122 | - |
| Pfam | PF00005 | ABC transporter | 1286 | 1434 | 8.1E-30 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 657 | 791 | 2.4E-19 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 953 | 1193 | 4.9E-29 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 326 | 592 | 1.1E-23 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 314 | 624 | 1.83E-33 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 950 | 1250 | 3.66E-55 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 636 | 861 | 4.69E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1260 | 1495 | 2.86E-65 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 297 | 627 | 5.2E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 628 | 875 | 3.1E-73 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 914 | 1250 | 2.1E-63 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1252 | 1505 | 5.1E-79 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1295 | 1487 | 2.0E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 666 | 839 | 1.8E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1271 | 1503 | 18.560886 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 952 | 1232 | 39.611866 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 639 | 862 | 22.122292 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 325 | 605 | 32.842884 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 764 | 778 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 903 | 924 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_006407263.1 | ABC transporter C family member 3 [Eutrema salsugineum] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | V4NQ64 | ABC-type xenobiotic transporter OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019893mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology