Basic Information
Locus ID:
Sp3g11200.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 3820703 | 3823397 | + | Sp3g11200.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 54,322.22 Da | 38.41 | 111.68 | 0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00083 | Sugar (and other) transporter | 60 | 243 | 3.3E-34 | IPR005828 |
| Pfam | PF07690 | Major Facilitator Superfamily | 346 | 484 | 1.1E-12 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 6 | 487 | 3.4E-69 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 20 | 490 | 6.1E-85 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 26 | 482 | 38.643192 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 358 | 373 | - | IPR005829 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_006407270.1 | organic cation/carnitine transporter 7 [Eutrema salsugineum] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1J3CSI4 | Organic cation/carnitine transporter 7 OS=Noccaea caerulescens OX=107243 GN=GA_TR4195_c0_g1_i1_g.14582 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology