Basic Information
Locus ID:
Sp3g10630.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Chitin binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 3613007 | 3614858 | - | Sp3g10630.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 55,406.97 Da | 41.35 | 63.19 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 75 | 229 | 1.44058E-77 | - |
| CDD | cd06921 | ChtBD1_GH19_hevein | 21 | 60 | 1.19896E-18 | - |
| Pfam | PF00187 | Chitin recognition protein | 22 | 60 | 3.3E-13 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 74 | 231 | 1.1E-89 | IPR000726 |
| Pfam | PF04434 | SWIM zinc finger | 373 | 395 | 1.1E-4 | IPR007527 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 22 | 64 | 2.88E-11 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 71 | 238 | 1.1E-74 | IPR023346 |
| Gene3D | G3DSA:1.10.530.10 | - | 73 | 260 | 7.5E-41 | - |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 158 | 213 | 1.1E-28 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 20 | 62 | 8.9E-17 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 22 | 60 | 4.9E-15 | IPR001002 |
| SMART | SM00575 | 26again6 | 373 | 400 | 1.3E-6 | IPR006564 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 20 | 62 | 11.000197 | IPR001002 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 365 | 398 | 9.668254 | IPR007527 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 218 | 228 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 32 | 51 | - | IPR018371 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 92 | 114 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 30 | 38 | 3.1E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 45 | 52 | 3.1E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 38 | 45 | 3.1E-5 | IPR001002 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 476 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_018490597.1 | PREDICTED: endochitinase CH25 [Raphanus sativus] | 0 |
| P19171 | Basic endochitinase B OS=Arabidopsis thaliana OX=3702 GN=CHI-B PE=1 SV=3 | 0 | |
| TrEMBL | A0A1J3ECM7 | Endochitinase CH25 OS=Noccaea caerulescens OX=107243 GN=LC_TR16405_c0_g1_i1_g.56197 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology