Basic Information
Locus ID:
Sp3g10120.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 3433020 | 3441516 | - | Sp3g10120.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 130,334.74 Da | 41.36 | 77.33 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 195 | 523 | 3.6233E-170 | - |
| CDD | cd00121 | MATH | 53 | 177 | 8.36409E-37 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 197 | 518 | 1.5E-46 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 883 | 1092 | 6.7E-57 | IPR029346 |
| Pfam | PF00917 | MATH domain | 59 | 179 | 3.7E-18 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 622 | 873 | 4.9E-77 | IPR024729 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 192 | 549 | 3.34E-97 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 50 | 186 | 1.36E-37 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 799 | 896 | 6.6E-28 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 194 | 522 | 3.6E-89 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 52 | 193 | 2.8E-48 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 682 | 798 | 2.6E-42 | - |
| SMART | SM00061 | math_3 | 54 | 158 | 2.8E-15 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 197 | 521 | 40.460903 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 52 | 177 | 36.244034 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 198 | 213 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 437 | 454 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| Coils | Coil | Coil | 534 | 557 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.2 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_024015795.1 | ubiquitin carboxyl-terminal hydrolase 13 isoform X2 [Eutrema salsugineum] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | V4NQH3 | ubiquitinyl hydrolase 1 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019920mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology