Basic Information
Locus ID:
Sp3g10070.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 3418113 | 3419831 | - | Sp3g10070.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 53,693.59 Da | 55.52 | 105.99 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 10 | 80 | 1.1E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 81 | 3.65E-27 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 109 | 437 | 2.83E-11 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 117 | 446 | 1.5E-9 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 86 | 1.2E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 13 | 76 | 5.4E-34 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 9 | 83 | 36.277981 | IPR003613 |
| Coils | Coil | Coil | 151 | 179 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_013587093.1 | PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Brassica oleracea var. oleracea] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S9GS44 | RING-type E3 ubiquitin transferase OS=Brassica cretica OX=69181 GN=F2Q70_00023588 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology