Basic Information
Locus ID:
Sp3g08780.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
protein binding, zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 2963504 | 2968389 | + | Sp3g08780.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 94,873.17 Da | 65.87 | 65.14 | -1.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 775 | 815 | 6.00181E-20 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 773 | 820 | 3.4E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 775 | 821 | 6.67E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 763 | 826 | 8.5E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 776 | 815 | 10.261575 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 500 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 480 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 326 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 231 | - | - |
| Coils | Coil | Coil | 722 | 742 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013586553.1 | PREDICTED: uncharacterized protein LOC106295247 [Brassica oleracea var. oleracea] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 0 | |
| TrEMBL | A0A3P6FGL3 | RING-type domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC5T34411H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology