Basic Information
Locus ID:
Sp3g08500.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
cofactor B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 2854989 | 2857086 | + | Sp3g08500.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 27,264.47 Da | 44.91 | 72.14 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01789 | Ubl_TBCB | 14 | 93 | 6.32748E-33 | - |
| Pfam | PF14560 | Ubiquitin-like domain | 14 | 98 | 3.8E-27 | IPR000626 |
| Pfam | PF01302 | CAP-Gly domain | 161 | 227 | 4.8E-21 | IPR000938 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 9 | 100 | 2.24E-19 | IPR029071 |
| SUPERFAMILY | SSF74924 | Cap-Gly domain | 103 | 231 | 4.45E-35 | IPR036859 |
| Gene3D | G3DSA:3.10.20.90 | - | 13 | 97 | 4.2E-30 | - |
| Gene3D | G3DSA:2.30.30.190 | - | 155 | 236 | 1.9E-27 | IPR036859 |
| SMART | SM01052 | CAP_GLY_2 | 161 | 228 | 1.3E-27 | IPR000938 |
| ProSiteProfiles | PS50245 | CAP-Gly domain profile. | 181 | 223 | 16.464802 | IPR000938 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10220.1 | tubulin folding cofactor B. Encodes a tubulin-binding cofactor. Homozygous mutant plants are embryo lethal. Heterozygous mutant plants showed increased ploidy and higher numbers of spindles and phragmoplasts, suggesting a role in cell division. | 0 |
| RefSeq | XP_006407593.1 | tubulin-folding cofactor B isoform X2 [Eutrema salsugineum] | 0 |
| Q67Z52 | Tubulin-folding cofactor B OS=Arabidopsis thaliana OX=3702 GN=TFCB PE=1 SV=1 | 0 | |
| TrEMBL | A0A565B8E4 | CAP-Gly domain-containing protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS7530 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1117 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_14088, gene_14089, gene_9374 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12289, Sbi_jg24594 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28720 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00014735, GOSA_00014736 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41795, Sgl46595 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000011577, gene:ENSEOMG00000016645 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.8AG0014610, CQ.Regalona.r1.8BG0015900 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30087880 |
| Apiaceae | Apium graveolens | 1 | Ag7G02100 |
| Arecaceae | Cocos nucifera | 1 | scaffold003237G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713905 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2876.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G03165 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G10220.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021412m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g08500.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g054760.2N, BniB07g057870.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0939 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1052, Cgl04G1065 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g01850 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0118s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g13280 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2598 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007665 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07487 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2820, BH09.3052, CH09.3226 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0298230, gene-QOZ80_4BG0328890 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0217510.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032479 |
| Poaceae | Oryza coarctata | 2 | Oco07G020120, Oco08G019490 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g59560.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G297600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402874, Pt_Chr0405585 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr30G000250 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G1040900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG081770, gene_TRIDC2BG090870 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G559500.1, TraesCS2B02G620700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb076570_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6279 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22302 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1692, evm.TU.LG10.1181 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g19160 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1645 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17561 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13572 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.81 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012043 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13231 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12337 |
| Salicaceae | Populus euphratica | 1 | populus_peu10860 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632362 |
| Solanaceae | Solanum chilense | 1 | SOLCI001832700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014162 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.5078_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0445 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23500.v3.1 |