Basic Information
Locus ID:
Sp3g08100.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 2721306 | 2723829 | - | Sp3g08100.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.31 | 52,713.50 Da | 62.91 | 82.59 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 256 | 304 | 1.1042E-16 | - |
| Pfam | PF12906 | RING-variant domain | 256 | 303 | 1.3E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 252 | 307 | 5.89E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 242 | 311 | 1.2E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 255 | 304 | 5.7E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 248 | 310 | 19.038816 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09760.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006407641.1 | probable E3 ubiquitin-protein ligase MARCH10 [Eutrema salsugineum] | 0 |
| TrEMBL | V4LZ20 | RING-CH-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020625mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology