Basic Information
Locus ID:
Sp3g07530.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 2541277 | 2546276 | - | Sp3g07530.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 109,723.41 Da | 44.39 | 78.90 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 16 | 49 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 66 | 91 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 592 | 629 | 0.0044 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 280 | 327 | 0.021 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 5 | 631 | 1.96E-44 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 176 | 328 | 1.1E-9 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 163 | 464 | 1.3E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 468 | 662 | 2.4E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 125 | 8.9E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 272 | 327 | 6.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 401 | 454 | 0.93 | IPR001680 |
| SMART | SM00320 | WD40_4 | 458 | 495 | 4.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 546 | 587 | 3.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 12 | 49 | 2.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 361 | 399 | 0.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 230 | 265 | 7.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 52 | 92 | 0.54 | IPR001680 |
| SMART | SM00320 | WD40_4 | 164 | 199 | 300.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 590 | 629 | 6.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 506 | 543 | 0.051 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 597 | 630 | 9.230148 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 314 | 328 | 8.603614 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 597 | 630 | 11.009724 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 890 | 906 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 879 | 906 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09080.3 | - | 0 |
| RefSeq | XP_048600757.1 | mitogen-activated protein kinase-binding protein 1-like isoform X2 [Brassica napus] | 0 |
| Q8HXL3 | WD repeat-containing protein 62 OS=Sus scrofa OX=9823 GN=WDR62 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6D2KSP5 | Mitogen-activated protein kinase-binding protein 1 OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS38302 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14799 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30285450 |
| Apiaceae | Apium graveolens | 1 | Ag5G02363 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G25194 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G09080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022253m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07530.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g058390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1051 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1076, Cgl08G1077 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1010s00004.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1069 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006461 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09988 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1767 |
| Salicaceae | Populus euphratica | 1 | populus_peu11401 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630690 |
| Solanaceae | Solanum chilense | 1 | SOLCI000172200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029641 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4371 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1795 |