Basic Information
Locus ID:
Sp3g07400.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
PDC1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 2501134 | 2503384 | + | Sp3g07400.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 60,503.38 Da | 30.94 | 86.04 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 400 | 541 | 2.11078E-69 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 42 | 199 | 3.47633E-85 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 38 | 203 | 7.3E-34 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 421 | 485 | 9.7E-16 | IPR011766 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 232 | 347 | 5.7E-21 | IPR012000 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 400 | 536 | 4.47E-32 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 38 | 212 | 3.16E-41 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 221 | 374 | 2.84E-32 | IPR029035 |
| Gene3D | G3DSA:3.40.50.1220 | - | 222 | 384 | 7.3E-42 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 35 | 208 | 2.1E-56 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 398 | 542 | 6.6E-46 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 33 | 400 | 2.4E-125 | IPR012110 |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 398 | 543 | 1.7E-54 | IPR012110 |
| ProSitePatterns | PS00187 | Thiamine pyrophosphate enzymes signature. | 435 | 454 | - | IPR000399 |
| Coils | Coil | Coil | 169 | 189 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_013617936.1 | PREDICTED: pyruvate decarboxylase 1-like [Brassica oleracea var. oleracea] | 0 |
| O82647 | Pyruvate decarboxylase 1 OS=Arabidopsis thaliana OX=3702 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3P6G6M0 | pyruvate decarboxylase OS=Brassica oleracea OX=3712 GN=BOLC1T05484H PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology