Basic Information
Locus ID:
Sp3g06060.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 2056696 | 2057787 | + | Sp3g06060.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.82 | 39,888.56 Da | 64.05 | 60.50 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 315 | 352 | 6.25623E-9 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 313 | 354 | 2.4E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 314 | 359 | 1.03E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 274 | 359 | 6.1E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 315 | 352 | 2.6E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 315 | 353 | 11.028731 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 260 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07120.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006407867.1 | E3 ubiquitin-protein ligase RNF34 [Eutrema salsugineum] | 0 |
| TrEMBL | V4LFP4 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10021010mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology