Basic Information
Locus ID:
Sp3g05650.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
PAPA-1-like family protein zinc finger (HIT type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 1916207 | 1918827 | + | Sp3g05650.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.65 | 47,851.46 Da | 56.99 | 60.51 | -1.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 385 | 416 | 2.3E-6 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 284 | 368 | 2.8E-18 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 284 | 369 | 1.3E-27 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 159 | - | - |
| Coils | Coil | Coil | 273 | 310 | - | - |
| Coils | Coil | Coil | 322 | 342 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06660.1 | PAPA-1-like family protein / zinc finger (HIT type) family protein. | 0 |
| RefSeq | XP_024015386.1 | INO80 complex subunit B [Eutrema salsugineum] | 0 |
| TrEMBL | V4LZR3 | PAPA-1 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020778mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology