Basic Information
Locus ID:
Sp3g05420.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 1807520 | 1812247 | - | Sp3g05420.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.95 | 117,456.18 Da | 60.87 | 60.83 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 666 | 795 | 2.36971E-60 | - |
| CDD | cd00201 | WW | 23 | 51 | 0.00574009 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 471 | 641 | 4.8E-48 | IPR011545 |
| Pfam | PF00397 | WW domain | 22 | 52 | 3.5E-6 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 678 | 786 | 7.6E-32 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 518 | 803 | 9.59E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 15 | 55 | 3.25E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 657 | 827 | 5.3E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 423 | 656 | 8.4E-87 | IPR027417 |
| SMART | SM00490 | helicmild6 | 702 | 786 | 4.7E-35 | IPR001650 |
| SMART | SM00487 | ultradead3 | 466 | 669 | 1.4E-65 | IPR014001 |
| SMART | SM00456 | ww_5 | 21 | 54 | 2.1E-6 | IPR001202 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.644501 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 447 | 475 | 11.416516 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 681 | 825 | 25.437172 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 478 | 652 | 31.144331 | IPR014001 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 598 | 606 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 932 | 955 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 913 | 1020 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 956 | 978 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 979 | 1014 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_006407941.1 | DEAD-box ATP-dependent RNA helicase 40 [Eutrema salsugineum] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | V4LZT7 | DEAD-box ATP-dependent RNA helicase 40 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019956mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology