Basic Information
Locus ID:
Sp3g05090.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 1694002 | 1695726 | - | Sp3g05090.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 40,930.74 Da | 69.22 | 66.65 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 303 | 343 | 6.40022E-26 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 302 | 348 | 3.2E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 303 | 349 | 3.06E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 286 | 354 | 1.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 304 | 342 | 2.0E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 304 | 343 | 11.722122 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013732683.2 | probable E3 ubiquitin-protein ligase LUL4 [Brassica napus] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A397ZFX9 | RING-type E3 ubiquitin transferase OS=Brassica campestris OX=3711 GN=BRAA05T22905Z PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology