Basic Information
Locus ID:
Sp3g04620.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ATP-dependent DNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 1535665 | 1539347 | + | Sp3g04620.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 66,615.17 Da | 45.71 | 80.05 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 385 | 518 | 2.13202E-68 | - |
| CDD | cd17920 | DEXHc_RecQ | 187 | 384 | 8.88514E-99 | - |
| Pfam | PF16124 | RecQ zinc-binding | 521 | 589 | 3.9E-13 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 195 | 363 | 6.9E-16 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 400 | 508 | 1.0E-15 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 233 | 529 | 1.86E-50 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 154 | 384 | 2.9E-83 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 385 | 592 | 3.3E-59 | IPR027417 |
| SMART | SM00487 | ultradead3 | 189 | 393 | 3.2E-25 | IPR014001 |
| SMART | SM00490 | helicmild6 | 427 | 509 | 1.3E-22 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 187 | 591 | 2.5E-153 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 399 | 549 | 18.749836 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 201 | 377 | 19.984196 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 316 | 325 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 110 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_009147215.1 | ATP-dependent DNA helicase Q-like 1 [Brassica rapa] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A078JKE0 | ATP-dependent DNA helicase OS=Brassica napus OX=3708 GN=BnaC05g52240D PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology