Basic Information
Locus ID:
Sp3g03160.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
U4 U6 small nuclear ribonucleoprotein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 1005231 | 1006382 | + | Sp3g03160.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 43,596.42 Da | 47.37 | 84.36 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 202 | 328 | 8.6E-20 | IPR013187 |
| Pfam | PF00646 | F-box domain | 8 | 44 | 3.1E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 76 | 1.7E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 58 | 3.6E-6 | - |
| SMART | SM00256 | fbox_2 | 8 | 48 | 3.6E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 105 | 342 | 5.1E-35 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 2 | 51 | 9.126548 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70970.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_006301051.1 | putative F-box protein At1g70970 [Capsella rubella] | 0 |
| Q9SSK2 | Putative F-box protein At1g70970 OS=Arabidopsis thaliana OX=3702 GN=At1g70970 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8T2HIN6 | F-box domain OS=Arabidopsis suecica OX=45249 GN=ISN44_As01g061030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT1G70380.1, AT1G70390.1, AT1G70960.1, AT1G70970.1 ... |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019476m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g03160.v2.2, Sp6g11610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g059530.2N |