Basic Information
Locus ID:
Sp3g02900.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 912470 | 915030 | - | Sp3g02900.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 87,946.02 Da | 42.22 | 109.46 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 250 | 310 | 7.6E-7 | IPR001611 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 534 | 572 | 1.4E-6 | IPR025875 |
| Pfam | PF13855 | Leucine rich repeat | 629 | 685 | 2.2E-11 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 24 | 72 | 8.2E-8 | IPR013210 |
| SUPERFAMILY | SSF52047 | RNI-like | 326 | 713 | 1.73E-55 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 52 | 363 | 2.31E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 191 | 2.0E-36 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 288 | 485 | 2.4E-48 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 192 | 287 | 1.4E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 628 | 739 | 6.7E-39 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 486 | 602 | 2.5E-27 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 152 | 181 | 83.0 | - |
| SMART | SM00369 | LRR_typ_2 | 696 | 719 | 61.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 224 | 248 | 0.66 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 557 | 583 | 55.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 248 | 277 | 48.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 224 | 244 | 52.0 | - |
| SMART | SM00369 | LRR_typ_2 | 557 | 581 | 6.1 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 648 | 671 | 8.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 176 | 200 | 9.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 272 | 297 | 51.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 508 | 532 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 672 | 695 | 7.4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 128 | 152 | 10.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 533 | 556 | 600.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 672 | 698 | 0.082 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 226 | 248 | 7.196008 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 674 | 697 | 7.034293 | IPR001611 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 22 | 6.0 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 698 | 720 | 7.804363 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 675 | 688 | 2.2E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 696 | 709 | 2.2E-6 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04220.1 | receptor like protein 46. | 0 |
| RefSeq | XP_006296996.1 | LRR receptor-like serine/threonine-protein kinase GSO2 [Capsella rubella] | 0 |
| F4JGB6 | Receptor-like protein 46 OS=Arabidopsis thaliana OX=3702 GN=RLP46 PE=3 SV=1 | 0 | |
| TrEMBL | A0A1J3CZ23 | Receptor-like protein 12 (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR2069_c0_g1_i1_g.6762 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |