Basic Information
Locus ID:
Sp3g01570.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 499634 | 502568 | - | Sp3g01570.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 44,335.45 Da | 54.39 | 78.19 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 73 | 1.01998E-30 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 372 | 414 | 1.68627E-23 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 182 | 231 | 1.67658E-30 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 75 | 5.1E-17 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 291 | 346 | 3.2E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 376 | 411 | 1.5E-11 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 188 | 226 | 1.4E-14 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 92 | 4.14E-21 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 354 | 418 | 2.79E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 185 | 241 | 2.55E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 287 | 353 | 4.32E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 367 | 415 | 6.7E-24 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 283 | 347 | 5.2E-27 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 5.8E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 181 | 231 | 3.3E-22 | - |
| SMART | SM00727 | CBM | 289 | 332 | 1.8E-5 | IPR006636 |
| SMART | SM00165 | uba_6 | 376 | 413 | 4.6E-8 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.2E-19 | IPR000626 |
| SMART | SM00165 | uba_6 | 188 | 228 | 1.9E-6 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 419 | 7.7E-110 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 373 | 414 | 14.73973 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.17078 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 186 | 229 | 12.836059 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 317 | 339 | 3.7E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 402 | 417 | 3.7E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 387 | 401 | 3.7E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 370 | 386 | 3.7E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 110 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_010485565.1 | PREDICTED: ubiquitin receptor RAD23c-like [Camelina sativa] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7P7M3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_085176 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology