Basic Information
Locus ID:
Sp3g00510.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 143898 | 148099 | + | Sp3g00510.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.78 | 70,010.99 Da | 49.34 | 66.16 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 387 | 516 | 5.44467E-63 | - |
| CDD | cd00201 | WW | 21 | 51 | 5.43549E-5 | IPR001202 |
| Pfam | PF00397 | WW domain | 20 | 50 | 4.5E-7 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 192 | 361 | 1.4E-47 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 399 | 507 | 7.5E-33 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 15 | 53 | 2.54E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 240 | 522 | 1.11E-72 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 14 | 57 | 4.7E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 378 | 549 | 9.6E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 144 | 377 | 6.8E-86 | IPR027417 |
| SMART | SM00490 | helicmild6 | 423 | 507 | 1.7E-33 | IPR001650 |
| SMART | SM00487 | ultradead3 | 187 | 390 | 1.1E-61 | IPR014001 |
| SMART | SM00456 | ww_5 | 19 | 52 | 7.5E-5 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 168 | 196 | 11.056714 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 402 | 546 | 25.666222 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 18 | 52 | 11.152 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 199 | 373 | 29.421583 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 319 | 327 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 24 | 50 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 548 | 646 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 606 | 621 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 79 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_006408522.1 | DEAD-box ATP-dependent RNA helicase 14 [Eutrema salsugineum] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | V4LHJ4 | DEAD-box ATP-dependent RNA helicase 14 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020294mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology