Basic Information
Locus ID:
Sp2g30680.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 9576434 | 9577608 | - | Sp2g30680.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 28,636.38 Da | 48.16 | 65.12 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12254 | RRM_hnRNPH_ESRPs_RBM12_like | 51 | 120 | 2.16416E-23 | - |
| CDD | cd12254 | RRM_hnRNPH_ESRPs_RBM12_like | 168 | 240 | 1.2815E-28 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 171 | 237 | 1.9E-8 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 53 | 115 | 1.5E-4 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 47 | 129 | 3.26E-16 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 166 | 253 | 4.16E-20 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 151 | 256 | 6.1E-28 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 50 | 133 | 4.6E-22 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 51 | 120 | 3.8E-4 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 168 | 240 | 6.1E-8 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 167 | 244 | 9.780305 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66010.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | NP_201402.3 | RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] | 0 |
| Q5E9J1 | Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 SV=3 | 0 | |
| TrEMBL | A0A654GEG7 | RRM domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS26933 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg19930, jg30933, jg35561, jg8559 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11634, gene_13365 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004988, Ah026877 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g072690, BVRB_6g130800 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg13674, Sbi_jg17996, Sbi_jg52227, Sbi_jg62621 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1208, Seu_jg9618 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00014420, GOSA_00017643 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23850, Sgl29021, Sgl33226, Sgl38834 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000002790, gene:ENSEOMG00000003814 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0001490, CQ.Regalona.r1.4BG0001600 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30053060, pistato.v30212160 |
| Apiaceae | Apium graveolens | 2 | Ag3G01780, Ag9G01445 |
| Arecaceae | Cocos nucifera | 4 | COCNU_06G014570, COCNU_09G005410, COCNU_14G012190 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103701104, gene-LOC103703680, gene-LOC103704569 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1051.V1.1, AsparagusV1_07.3730.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G19395, Ftri17G00270, Ftri6G33629 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G20890.1, AT5G66010.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021270m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g30680.v2.2, Sp3g18920.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g042780.2N, BniB07g031560.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1903 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1904 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g02780, gene.Cymno12g02910 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.1139s00002.v1.0, Dusal.1266s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g12960, gene.Thate08g03200 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8736 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2873, evm.TU.LG09.230 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00017108, Pov_00020330 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G21209, Lb6G30274, Lb6G30275 |
| Poaceae | Echinochloa crus-galli | 1 | BH05.1422 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0361750, gene-QOZ80_5BG0410150 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0544100.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019510 |
| Poaceae | Oryza coarctata | 2 | Oco03G026380, Oco04G026780 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g58600.1, LOC_Os11g03890.1, LOC_Os12g03710.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_09G043100, gene-BS78_09G250300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0200984, Pt_Chr0201000 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G016170, Chr12G020570, Chr18G016380, Chr22G000380 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G092500 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6AG004300 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G035800.1, TraesCS6B02G050200.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb297160_P002, Zm00001eb323990_P004 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13569, nbis-gene-24743 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g27446, Zma_g27447, Zma_g28886, Zma_g28887 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.1585, evm.TU.LG15.1675, evm.TU.LG18.1762 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g05460, gene.Posoc09g06410 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.25, evm.TU.Scaffold_6_RagTag.2193 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16947, nbisL1-mrna-24776 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12884, nbisL1-mrna-5966 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11646, nbisL1-mrna-19344 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1344, evm.TU.utg000027l.555 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007688, Maker00017989 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-23119, nbisL1-mrna-5440 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11570, nbisL1-mrna-23692 |
| Salicaceae | Populus euphratica | 3 | populus_peu01932, populus_peu14025, populus_peu35875 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132623343, gene-LOC132643580 |
| Solanaceae | Solanum chilense | 3 | SOLCI000081000, SOLCI003502800, SOLCI007267900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107004838, gene-LOC107011669, gene-LOC107015497 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.25149_chr10_+, STRG.28634_chr04_+, gene_5549 |
| Tamaricaceae | Tamarix chinensis | 3 | TC02G2074, TC02G3691, TC04G0899 |
| Zosteraceae | Zostera marina | 1 | Zosma01g19890.v3.1 |