Basic Information
Locus ID:
Sp2g30540.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
glycosyl hydrolase family 38 protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 9536091 | 9541457 | + | Sp2g30540.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 116,780.03 Da | 41.10 | 80.65 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 45 | 321 | 4.52012E-174 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 363 | 455 | 1.9E-20 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 46 | 358 | 2.3E-93 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 904 | 1011 | 1.5E-11 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 605 | 821 | 1.9E-55 | IPR011682 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 34 | 359 | 7.04E-109 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 466 | 1014 | 1.24E-140 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 363 | 457 | 1.96E-27 | IPR028995 |
| Gene3D | G3DSA:2.60.40.1360 | - | 895 | 1018 | 4.5E-33 | - |
| Gene3D | G3DSA:2.70.98.30 | - | 602 | 869 | 7.8E-95 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 45 | 325 | 8.2E-121 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1180 | - | 469 | 580 | 1.3E-24 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 326 | 405 | 2.5E-31 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 406 | 461 | 1.5E-20 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 363 | 437 | 4.4E-22 | IPR015341 |
| Coils | Coil | Coil | 951 | 971 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_006393801.2 | probable alpha-mannosidase At5g66150 isoform X1 [Eutrema salsugineum] | 0 |
| Q9FKW9 | Probable alpha-mannosidase At5g66150 OS=Arabidopsis thaliana OX=3702 GN=At5g66150 PE=3 SV=1 | 0 | |
| TrEMBL | V4KME6 | Alpha-mannosidase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003575mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology