Basic Information
Locus ID:
Sp2g30530.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Receptor homology region transmembrane domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 9533498 | 9535193 | - | Sp2g30530.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 34,485.02 Da | 41.38 | 85.94 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 231 | 274 | 4.04292E-21 | - |
| CDD | cd02123 | PA_C_RZF_like | 16 | 156 | 2.72423E-46 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 231 | 274 | 5.9E-12 | IPR001841 |
| Pfam | PF02225 | PA domain | 61 | 145 | 3.4E-9 | IPR003137 |
| SUPERFAMILY | SSF57850 | RING/U-box | 224 | 280 | 1.06E-19 | - |
| SUPERFAMILY | SSF52025 | PA domain | 83 | 149 | 8.24E-8 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 25 | 155 | 5.2E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 207 | 284 | 1.5E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 232 | 273 | 5.4E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 232 | 274 | 12.917115 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.1 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_020883927.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A087GEH4 | RING-type domain-containing protein OS=Arabis alpina OX=50452 GN=AALP_AA8G495500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology