Basic Information
Locus ID:
Sp2g29210.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 9096345 | 9099920 | + | Sp2g29210.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 65,236.17 Da | 51.27 | 82.94 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 21 | 125 | 3.25389E-46 | - |
| Pfam | PF00651 | BTB/POZ domain | 28 | 117 | 1.4E-8 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 203 | 455 | 2.6E-85 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 22 | 117 | 8.89E-20 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 11 | 120 | 2.0E-12 | IPR011333 |
| SMART | SM00225 | BTB_4 | 29 | 126 | 0.002 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 203 | 479 | 85.462479 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 98 | 10.799049 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 555 | 572 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 545 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 531 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67440.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_020891627.1 | BTB/POZ domain-containing protein NPY3 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q9FN09 | Phototropic-responsive NPH3 family protein NPY3 OS=Arabidopsis thaliana OX=3702 GN=NPY3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T1XXT3 | SKP1/BTB/POZ domain superfamily OS=Arabidopsis suecica OX=45249 GN=ISN44_As13g030430 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology