Basic Information
Locus ID:
Sp2g28530.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 8832413 | 8835921 | + | Sp2g28530.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 84,628.95 Da | 57.50 | 75.16 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 347 | 647 | 2.5E-40 | IPR001394 |
| Pfam | PF01753 | MYND finger | 58 | 95 | 2.2E-9 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 343 | 651 | 4.51E-81 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 55 | 96 | 1.05E-10 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 340 | 662 | 1.7E-83 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 48 | 98 | 5.1E-12 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 58 | 95 | 11.516247 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 347 | 650 | 48.471928 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 58 | 95 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 348 | 363 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 724 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 686 | 724 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 685 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 147 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_013643065.2 | ubiquitin carboxyl-terminal hydrolase 17 [Brassica napus] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A397Z0E0 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Brassica campestris OX=3711 GN=BRARA_F02412 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology