Basic Information
Locus ID:
Sp2g28030.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 8630706 | 8636375 | + | Sp2g28030.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 89,198.48 Da | 44.82 | 80.06 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 407 | 457 | 4.96591E-25 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 467 | 610 | 2.0E-16 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 408 | 456 | 2.0E-12 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 388 | 456 | 4.47E-15 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 296 | 776 | 9.75E-51 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 268 | 623 | 5.7E-146 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 101 | 267 | 3.2E-42 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 624 | 784 | 6.9E-47 | - |
| SMART | SM00439 | BAH_4 | 167 | 282 | 1.9E-8 | IPR001025 |
| SMART | SM00298 | chromo_7 | 407 | 460 | 7.1E-9 | IPR000953 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 408 | 455 | 12.919501 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 167 | 282 | 15.417935 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 295 | 784 | 26.058332 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 515 | 529 | 4.7E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 296 | 312 | 4.7E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 561 | 574 | 4.7E-10 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_013629092.1 | PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 [Brassica oleracea var. oleracea] | 0 |
| Q94F88 | DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana OX=3702 GN=CMT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8S9P5Q9 | Cytosine-specific methyltransferase OS=Brassica cretica OX=69181 GN=F2Q69_00004774 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology