Basic Information
Locus ID:
Sp2g26750.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 8171518 | 8176834 | - | Sp2g26750.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 58,387.21 Da | 37.78 | 94.06 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 203 | 500 | 7.11079E-39 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 423 | 457 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 202 | 237 | 4.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 466 | 500 | 1.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 247 | 283 | 0.0019 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 198 | 500 | 9.52E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 193 | 465 | 1.1E-47 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 466 | 512 | 9.2E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 286 | 325 | 50.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 462 | 502 | 2.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 416 | 458 | 0.68 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 238 | 1.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 244 | 283 | 1.4E-5 | IPR001680 |
| SMART | SM00668 | ctlh | 46 | 100 | 7.7E-4 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 206 | 240 | 10.07378 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 13 | 45 | 8.853994 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 51 | 100 | 9.670549 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 251 | 288 | 9.941962 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 251 | 292 | 13.415834 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 469 | 500 | 10.842632 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 206 | 247 | 12.145943 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 469 | 500 | 9.09833 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 225 | 239 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_023632564.1 | WD repeat-containing protein 26 homolog [Capsella rubella] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A565CW31 | CTLH domain-containing protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS28352 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology