Basic Information
Locus ID:
Sp2g26610.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 8114070 | 8116834 | - | Sp2g26610.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.56 | 57,129.73 Da | 50.76 | 87.41 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 28 | 70 | 1.1E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 24 | 63 | 1.83E-9 | IPR036047 |
| SMART | SM01204 | FIST_C_2 | 345 | 489 | 3.8E-8 | IPR019494 |
| SMART | SM00256 | fbox_2 | 30 | 70 | 0.0058 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| Coils | Coil | Coil | 416 | 436 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63520.1 | 0 | |
| RefSeq | XP_048628366.1 | F-box/LRR-repeat protein At5g63520-like [Brassica napus] | 0 |
| Q9FMV0 | F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana OX=3702 GN=At5g63520 PE=2 SV=1 | 0 | |
| TrEMBL | A0A398AJN4 | FIST_C domain-containing protein OS=Brassica campestris OX=3711 GN=BRARA_B03854 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25604 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19814 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001758 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg27868 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7393 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027915 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45880, Sgl50583 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005130, gene:ENSEOMG00000023275 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5AG0017180 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30012000 |
| Apiaceae | Apium graveolens | 3 | Ag10G00217, Ag9G00528, Ag9G00531 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G20861 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G63520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004048m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g26610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g001850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2024 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2197 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.639 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00041574 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G27275, Lb5G27276 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.213, evm.TU.LG09.1454 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.344 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-12341, nbisL1-mrna-12730, nbisL1-mrna-20638 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1604 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1962 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.220 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001440 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14689 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1348 |
| Salicaceae | Populus euphratica | 7 | populus_peu10396, populus_peu18440, populus_peu18441 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132606259, gene-LOC132613423, gene-LOC132614512 |
| Solanaceae | Solanum chilense | 3 | SOLCI001088000, SOLCI001937300, SOLCI001937800 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107016212, gene-LOC107018107, gene-LOC107032176 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15390 |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G0254, TC09G0822 |