Basic Information
Locus ID:
Sp2g26240.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
histone deacetylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 8002741 | 8005169 | - | Sp2g26240.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 52,964.59 Da | 47.04 | 71.63 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 24 | 331 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 38 | 329 | 5.6E-87 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 19 | 383 | 4.8E-125 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 11 | 397 | 2.0E-137 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 3 | 471 | 1.4E-202 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 106 | 123 | 1.5E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 73 | 91 | 1.5E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 127 | 147 | 1.5E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 244 | 262 | 1.5E-60 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 266 | 276 | 2.6E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 40 | 57 | 1.5E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 227 | 240 | 1.5E-60 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 149 | 172 | 2.6E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 181 | 196 | 2.6E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 168 | 184 | 1.5E-60 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 416 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 463 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_024007071.1 | LOW QUALITY PROTEIN: histone deacetylase 6 [Eutrema salsugineum] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | D7MNF1 | Histone deacetylase OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_496493 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology