Basic Information
Locus ID:
Sp2g25710.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
UBC3
Description:
ubiquitin-conjugating enzyme
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 7798424 | 7799249 | + | Sp2g25710.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 12,063.71 Da | 80.91 | 87.45 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 101 | 3.106E-34 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 43 | 100 | 8.5E-18 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 2 | 105 | 9.27E-31 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 43 | 106 | 9.2E-23 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 42 | 8.7E-10 | IPR016135 |
| SMART | SM00212 | ubc_7 | 7 | 106 | 7.0E-13 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 106 | 20.489166 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62540.1 | ubiquitin-conjugating enzyme 3. Encodes a protein predicted to be an E2 ubiquitin conjugating enzyme. It appears homologous to the RAD6 protein in yeast implicated in histone ubiquitination, but, UBC3 has not been experimentally associated with this process. | 0 |
| RefSeq | XP_013618718.1 | PREDICTED: ubiquitin-conjugating enzyme E2 3 [Brassica oleracea var. oleracea] | 0 |
| P42746 | Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana OX=3702 GN=UBC3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A565CVV5 | UBC core domain-containing protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS28161 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 1 | Ftri13G14664 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g25710.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g005980.2N |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G221600 |