Basic Information
Locus ID:
Sp2g23730.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 6997085 | 7003781 | + | Sp2g23730.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 91,665.13 Da | 49.08 | 78.46 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 10 | 262 | 6.47775E-67 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 54 | 88 | 0.0011 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 675 | 831 | 9.3E-49 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 136 | 172 | 4.9E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 10 | 45 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 176 | 214 | 1.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 94 | 130 | 1.4E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 7 | 295 | 2.15E-69 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 135 | 298 | 1.3E-37 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 134 | 1.9E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 175 | 214 | 9.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 49 | 88 | 2.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 172 | 2.0E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 217 | 255 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 6 | 46 | 7.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 1.6E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 98 | 132 | 11.81377 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 140 | 177 | 13.553762 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 182 | 217 | 13.026491 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 13 | 45 | 8.518333 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 98 | 139 | 14.986489 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 13 | 55 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 56 | 90 | 10.996502 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 56 | 97 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 181 | 17.593109 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 182 | 223 | 16.390055 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 201 | 215 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 159 | 173 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 117 | 131 | 2.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 201 | 215 | 2.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 159 | 173 | 2.1E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 2 | 835 | 20.255819 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 577 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 610 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23430.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_006394609.2 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X2 [Eutrema salsugineum] | 0 |
| Q8H0T9 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 OS=Arabidopsis thaliana OX=3702 GN=KTN80.4 PE=1 SV=3 | 0 | |
| TrEMBL | V4K1V0 | Katanin_con80 domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005394mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology