Basic Information
Locus ID:
Sp2g23340.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
mitochondrial transcription termination factor family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 6847681 | 6849048 | + | Sp2g23340.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.58 | 51,686.46 Da | 46.04 | 96.99 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 93 | 428 | 9.8E-104 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 217 | 440 | 1.3E-44 | IPR038538 |
| SMART | SM00733 | mt_12 | 275 | 305 | 1.9E-4 | IPR003690 |
| SMART | SM00733 | mt_12 | 377 | 411 | 41.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 107 | 138 | 0.062 | IPR003690 |
| SMART | SM00733 | mt_12 | 143 | 174 | 270.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 240 | 270 | 1.6 | IPR003690 |
| SMART | SM00733 | mt_12 | 345 | 376 | 4.3E-4 | IPR003690 |
| SMART | SM00733 | mt_12 | 310 | 340 | 0.0094 | IPR003690 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 322 | 365 | 8.83594 | IPR015940 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23930.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_006394654.1 | uncharacterized protein LOC18011649 [Eutrema salsugineum] | 0 |
| TrEMBL | V4K1Z3 | Mitochodrial transcription termination factor-related protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10004187mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 13 | AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 14 | Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... |