Basic Information
Locus ID:
Sp2g23210.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Inactive leucine-rich repeat receptor-like serine threonine-protein kinase At5g24100
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 6796345 | 6800789 | - | Sp2g23210.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.38 | 69,401.79 Da | 40.39 | 95.42 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 74 | 132 | 1.4E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 192 | 212 | 0.038 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 354 | 616 | 1.7E-28 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 67 | 9.1E-8 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 32 | 215 | 7.14E-36 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 355 | 620 | 7.02E-47 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 318 | 425 | 5.2E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 234 | 2.9E-46 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 427 | 625 | 1.9E-40 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 351 | 622 | 24.485048 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 357 | 379 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 249 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24100.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_013609769.1 | PREDICTED: inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At5g24100 [Brassica oleracea var. oleracea] | 0 |
| Q9FL63 | Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At5g24100 OS=Arabidopsis thaliana OX=3702 GN=At5g24100 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J3JH99 | Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase OS=Noccaea caerulescens OX=107243 GN=MP_TR235_c0_g1_i1_g.753 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G24100.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003837m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g23210.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g040330.2N |