Basic Information
Locus ID:
Sp2g22190.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
EBF2
Description:
EIN3-binding F box protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 6359566 | 6361803 | + | Sp2g22190.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.86 | 65,883.37 Da | 49.46 | 102.21 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 216 | 239 | 2.0 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 324 | 344 | 0.39 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 509 | 531 | 0.42 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 189 | 213 | 0.2 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 347 | 370 | 1.6 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 242 | 263 | 0.21 | IPR001611 |
| Pfam | PF00646 | F-box domain | 55 | 93 | 8.8E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 156 | 566 | 7.26E-34 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 51 | 92 | 9.16E-8 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 49 | 265 | 1.1E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 481 | 618 | 1.5E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 266 | 420 | 6.2E-19 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 421 | 480 | 2.0E-7 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 216 | 241 | 0.094 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 347 | 372 | 2.9E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 481 | 506 | 9.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 322 | 346 | 26.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 428 | 453 | 0.0081 | IPR006553 |
| SMART | SM00256 | fbox_2 | 58 | 100 | 3.0E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 242 | 267 | 0.072 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 454 | 479 | 0.022 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 534 | 558 | 87.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 561 | 586 | 39.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 508 | 533 | 2.4E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 190 | 215 | 1.8E-7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 164 | 189 | 0.23 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25350.1 | EIN3-binding F box protein 2. Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. | 0 |
| RefSeq | XP_009111664.1 | EIN3-binding F-box protein 2 [Brassica rapa] | 0 |
| Q708Y0 | EIN3-binding F-box protein 2 OS=Arabidopsis thaliana OX=3702 GN=EBF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VST4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_019792 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology