Basic Information
Locus ID:
Sp2g21980.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 6288819 | 6290925 | - | Sp2g21980.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 73,752.07 Da | 44.67 | 76.24 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 51 | 202 | 1.37698E-23 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 12 | 346 | 1.1E-91 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 76 | 164 | 2.9E-9 | IPR002934 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 213 | 346 | 3.14E-51 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 10 | 202 | 2.66E-45 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 348 | 442 | 8.24E-14 | IPR011068 |
| Gene3D | G3DSA:1.10.1410.10 | - | 12 | 344 | 6.6E-137 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 348 | 443 | 7.5E-6 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 44 | 200 | 6.6E-137 | IPR043519 |
| PIRSF | PIRSF018425 | PolyA_polymerase | 1 | 590 | 7.8E-181 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 516 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_006416650.1 | nuclear poly(A) polymerase 1 [Eutrema salsugineum] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2CGX3 | polynucleotide adenylyltransferase OS=Arabidopsis suecica OX=45249 GN=ISN44_As06g017960 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology