Basic Information
Locus ID:
Sp2g21970.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 6284471 | 6286407 | - | Sp2g21970.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 32,891.58 Da | 55.02 | 63.67 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 224 | 282 | 6.3E-27 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 176 | 219 | 1.3E-9 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 41 | 122 | 5.6E-17 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 39 | 112 | 2.35E-14 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 113 | 170 | 8.24E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 176 | 225 | 1.38E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 171 | 222 | 3.7E-12 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 248 | 286 | 2.4E-19 | - |
| SMART | SM00184 | ring_2 | 177 | 219 | 1.5E-8 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 112 | 176 | 34.145721 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 34 | 110 | 23.627665 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 177 | 220 | 12.297489 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_024007455.1 | probable E3 ubiquitin-protein ligase RZFP34 [Eutrema salsugineum] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | V4ML16 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10004654mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology