Basic Information
Locus ID:
Sp2g21040.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Topless-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch2-4 | 5909824 | 5916726 | + | Sp2g21040.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.82 | 123,297.47 Da | 36.39 | 84.26 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 449 | 483 | 0.0059 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 903 | 936 | 0.0034 | IPR001680 |
| SUPERFAMILY | SSF75011 | 3-carboxy-cis,cis-mucoante lactonizing enzyme | 343 | 487 | 1.2E-15 | - |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 747 | 1081 | 2.59E-29 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 440 | 936 | 1.02E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 321 | 535 | 2.4E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 954 | 1091 | 1.7E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 536 | 668 | 1.0E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 747 | 953 | 2.2E-22 | IPR015943 |
| SMART | SM00667 | Lish | 3 | 35 | 2.9E-4 | IPR006594 |
| SMART | SM00668 | ctlh | 33 | 91 | 2.4E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 392 | 436 | 34.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1037 | 1079 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 526 | 0.016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 986 | 1028 | 4.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 575 | 615 | 4.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 529 | 572 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 854 | 894 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 334 | 375 | 0.15 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 483 | 1.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 897 | 936 | 8.4E-6 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 3 | 35 | 9.827698 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 33 | 91 | 13.26722 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 449 | 485 | 9.505904 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 904 | 939 | 10.284687 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 904 | 945 | 12.847725 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 470 | 484 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1094 | 1114 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_024007663.1 | topless-related protein 3 isoform X2 [Eutrema salsugineum] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7TIW9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_094487 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology